Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, xre family with cupin sensor | SAMN06295900_115107 | Not Available | Positive | 5218587 - 5219255 | 24693.3 |
| ornithine cyclodeaminase | SAMN06295900_115108 | Not Available | Positive | 5219265 - 5220173 | 31097.2 |
| bifunctional non-homologous end joining protein ligd | SAMN06295900_115109 | Not Available | Negative | 5220203 - 5222995 | 102285.0 |
| dna end-binding protein ku | SAMN06295900_115110 | Not Available | Negative | 5223046 - 5223861 | 30283.4 |
| protein of unknown function | SAMN06295900_115111 | Not Available | Negative | 5224030 - 5224188 | 5654.4 |
| hypothetical protein | SAMN06295900_115112 | Not Available | Negative | 5224459 - 5225070 | 21270.1 |
| protein of unknown function | SAMN06295900_115113 | Not Available | Negative | 5225234 - 5225539 | 10690.8 |
| protease i | SAMN06295900_115114 | Not Available | Negative | 5225579 - 5226133 | 19940.8 |
| bacterioferritin | SAMN06295900_115115 | Not Available | Negative | 5226227 - 5226790 | 21245.0 |
| protein of unknown function | SAMN06295900_115116 | Not Available | Positive | 5227134 - 5227382 | 9095.95 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.