Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted metal-dependent hydrolase, tim-barrel fold | SAMN06295900_11597 | Not Available | Negative | 5208892 - 5209800 | 34094.3 |
| l-rhamnose mutarotase | SAMN06295900_11598 | Not Available | Negative | 5209816 - 5210130 | 12141.6 |
| transcriptional regulator, lysr family | SAMN06295900_11599 | Not Available | Positive | 5210258 - 5211250 | 36266.1 |
| l-rhamnose 1-dehydrogenase | SAMN06295900_115100 | Not Available | Negative | 5211244 - 5212026 | 27157.6 |
| l-rhamnonate dehydratase | SAMN06295900_115101 | Not Available | Negative | 5212119 - 5213297 | 43814.7 |
| sugar phosphate permease | SAMN06295900_115102 | Not Available | Negative | 5213359 - 5214684 | 46798.5 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN06295900_115103 | Not Available | Negative | 5214763 - 5215515 | 26544.8 |
| ureidoglycolate lyase/2,4-diketo-3-deoxy-l-fuconate hydrolase | SAMN06295900_115104 | Not Available | Negative | 5215512 - 5216375 | 30545.4 |
| molecular chaperone dnaj | SAMN06295900_115105 | Not Available | Positive | 5216550 - 5217629 | 38667.0 |
| glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase | SAMN06295900_115106 | Not Available | Negative | 5217788 - 5218261 | 16973.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.