Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cellulose biosynthesis protein bcse | SAMN06295900_11517 | Not Available | Negative | 5111259 - 5113265 | 72106.0 |
| lipopolysaccharide biosynthesis regulator ycim, contains six tpr domains and a predicted metal-binding c-terminal domain | SAMN06295900_11518 | Not Available | Negative | 5113352 - 5117251 | 140486.0 |
| endoglucanase | SAMN06295900_11519 | Not Available | Negative | 5117230 - 5118450 | 42900.5 |
| cellulose synthase subunit | SAMN06295900_11520 | Not Available | Negative | 5118454 - 5120685 | 79764.7 |
| diacylglycerol kinase (atp) | SAMN06295900_11521 | Not Available | Positive | 5121008 - 5121439 | 15561.5 |
| flagellar transcriptional activator flhd | SAMN06295900_11522 | Not Available | Positive | 5121853 - 5122173 | 11606.1 |
| flagellar transcriptional activator flhc | SAMN06295900_11523 | Not Available | Positive | 5122185 - 5122754 | 21293.7 |
| mannose-binding protein /fructose-binding protein /ribose-binding protein | SAMN06295900_11524 | Not Available | Positive | 5123079 - 5124074 | 34016.9 |
| mannose abc transporter membrane protein /fructose abc transporter membrane protein /ribose abc transporter membrane protein | SAMN06295900_11525 | Not Available | Positive | 5124153 - 5125151 | 34746.5 |
| mannose abc transporter atp-binding protein /fructose abc transporter atp-binding protein /ribose abc transporter atp-binding protein | SAMN06295900_11526 | Not Available | Positive | 5125180 - 5125974 | 28682.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.