Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| benzoate 1,2-dioxygenase, alpha subunit | SAMN06295900_1157 | Not Available | Negative | 5100822 - 5102189 | 51972.1 |
| catechol 1,2-dioxygenase | SAMN06295900_1158 | Not Available | Negative | 5102225 - 5103145 | 33560.6 |
| transcriptional regulator, lysr family | SAMN06295900_1159 | Not Available | Positive | 5103333 - 5104250 | 34585.3 |
| muconate cycloisomerase | SAMN06295900_11510 | Not Available | Positive | 5104401 - 5105555 | 40721.1 |
| muconolactone delta-isomerase | SAMN06295900_11511 | Not Available | Positive | 5105614 - 5105892 | 10591.8 |
| hypothetical protein | SAMN06295900_11512 | Not Available | Negative | 5105913 - 5106098 | 6771.98 |
| cellulose synthase operon protein yhju | SAMN06295900_11513 | Not Available | Negative | 5106095 - 5107648 | 56176.3 |
| cellulose synthase (udp-forming) | SAMN06295900_11514 | Not Available | Negative | 5107711 - 5110266 | 95701.6 |
| cellulose synthase operon protein yhjq | SAMN06295900_11515 | Not Available | Negative | 5110272 - 5111051 | 27424.9 |
| hypothetical protein | SAMN06295900_11516 | Not Available | Negative | 5111048 - 5111257 | 7763.67 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.