Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_11387 | Not Available | Positive | 4787074 - 4787544 | 16972.3 |
| hopene-associated glycosyltransferase hpnb | SAMN06295900_11388 | Not Available | Negative | 4787633 - 4788805 | 42492.7 |
| hypothetical protein | SAMN06295900_11389 | Not Available | Negative | 4788802 - 4788894 | 3350.93 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | SAMN06295900_11390 | Not Available | Positive | 4789215 - 4790159 | 33878.5 |
| hopanoid biosynthesis associated radical sam protein hpnh | SAMN06295900_11391 | Not Available | Positive | 4790170 - 4791324 | 43242.9 |
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN06295900_11392 | Not Available | Negative | 4791451 - 4792647 | 43506.1 |
| transcriptional regulator, arac family | SAMN06295900_11393 | Not Available | Positive | 4792776 - 4793612 | 30832.6 |
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN06295900_11394 | Not Available | Negative | 4793745 - 4794143 | 14921.8 |
| transcriptional regulator, lysr family | SAMN06295900_11395 | Not Available | Positive | 4794272 - 4795189 | 34000.2 |
| merr family regulatory protein | SAMN06295900_11396 | Not Available | Negative | 4795084 - 4795404 | 11548.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.