Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN06295900_11347 | Not Available | Negative | 4744366 - 4745832 | 52664.8 |
| hypothetical protein | SAMN06295900_11348 | Not Available | Negative | 4745847 - 4748168 | 84007.4 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN06295900_11349 | Not Available | Positive | 4748395 - 4749468 | 40076.7 |
| gdpmannose 4,6-dehydratase | SAMN06295900_11350 | Not Available | Positive | 4749536 - 4750579 | 38665.2 |
| nucleoside-diphosphate-sugar epimerase | SAMN06295900_11351 | Not Available | Positive | 4750576 - 4751514 | 33789.4 |
| microbial collagenase | SAMN06295900_11352 | Not Available | Negative | 4751563 - 4753539 | 72787.3 |
| inosine-uridine nucleoside n-ribohydrolase | SAMN06295900_11353 | Not Available | Negative | 4753866 - 4754831 | 33548.1 |
| cytidine deaminase | SAMN06295900_11354 | Not Available | Negative | 4754828 - 4755217 | 13828.4 |
| concentrative nucleoside transporter, cnt family | SAMN06295900_11355 | Not Available | Negative | 4755229 - 4756506 | 44414.7 |
| h-ns family dna-binding protein | SAMN06295900_11356 | Not Available | Negative | 4756621 - 4756914 | 10830.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.