Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein impk | SAMN06295900_1135 | Not Available | Positive | 4693113 - 4693838 | 26211.2 |
| ompa family protein | SAMN06295900_1136 | Not Available | Positive | 4693856 - 4695619 | 62936.6 |
| type vi secretion system secreted protein hcp | SAMN06295900_1137 | Not Available | Positive | 4695712 - 4696197 | 18368.6 |
| type vi secretion system protein vasg | SAMN06295900_1138 | Not Available | Positive | 4696329 - 4699073 | 98170.2 |
| type vi secretion system protein | SAMN06295900_1139 | Not Available | Positive | 4699087 - 4699512 | 15999.5 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN06295900_11310 | Not Available | Negative | 4699554 - 4700885 | 49813.3 |
| thiosulfate reductase cytochrome b subunit | SAMN06295900_11311 | Not Available | Positive | 4701325 - 4702011 | 24798.2 |
| dmso/tmao reductase yedyz, molybdopterin-dependent catalytic subunit | SAMN06295900_11312 | Not Available | Positive | 4702017 - 4702790 | 28694.5 |
| hypothetical protein | SAMN06295900_11313 | Not Available | Positive | 4702848 - 4703462 | 21074.3 |
| major facilitator superfamily protein | SAMN06295900_11314 | Not Available | Negative | 4703606 - 4704688 | 36863.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.