Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate isomerase/epimerase | SAMN06295900_112176 | Not Available | Positive | 4676353 - 4677147 | 28189.4 |
| 2-dehydro-3-deoxygluconokinase | SAMN06295900_112177 | Not Available | Positive | 4677180 - 4678139 | 34040.4 |
| sugar phosphate permease | SAMN06295900_112178 | Not Available | Positive | 4678167 - 4679444 | 45474.0 |
| gluconate 2-dehydrogenase | SAMN06295900_112179 | Not Available | Positive | 4679449 - 4680447 | 35336.7 |
| transcriptional regulator, laci family | SAMN06295900_112180 | Not Available | Positive | 4680664 - 4681731 | 38877.8 |
| protein of unknown function | SAMN06295900_112181 | Not Available | Positive | 4681828 - 4682193 | 13709.2 |
| pgdyg protein | SAMN06295900_112182 | Not Available | Negative | 4682248 - 4682715 | 16818.0 |
| ltxxq motif family protein | SAMN06295900_112183 | Not Available | Negative | 4682782 - 4683261 | 17365.7 |
| transcriptional regulator, asnc family | SAMN06295900_112184 | Not Available | Positive | 4683434 - 4683946 | 19124.2 |
| saccharopine dehydrogenase, nadp-dependent | SAMN06295900_112185 | Not Available | Positive | 4684194 - 4685297 | 40002.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.