Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnd family efflux transporter, mfp subunit | SAMN06295900_112166 | Not Available | Negative | 4665805 - 4666929 | 39324.4 |
| transcriptional regulator, tetr family | SAMN06295900_112167 | Not Available | Positive | 4667109 - 4667753 | 24101.6 |
| hypothetical protein | SAMN06295900_112168 | Not Available | Positive | 4667866 - 4669278 | 50176.9 |
| protein of unknown function | SAMN06295900_112169 | Not Available | Negative | 4669332 - 4669562 | 7929.2 |
| hypothetical protein | SAMN06295900_112170 | Not Available | Negative | 4669621 - 4669869 | 8363.12 |
| beta subunit of n-acylethanolamine-hydrolyzing acid amidase | SAMN06295900_112171 | Not Available | Negative | 4669966 - 4671303 | 50569.0 |
| chloride channel protein, cic family | SAMN06295900_112172 | Not Available | Negative | 4671468 - 4673132 | 59768.1 |
| glutathione s-transferase | SAMN06295900_112173 | Not Available | Negative | 4673325 - 4674053 | 27365.7 |
| conserved hypothetical integral membrane protein | SAMN06295900_112174 | Not Available | Negative | 4674152 - 4675225 | 36709.7 |
| transcriptional regulator, lysr family | SAMN06295900_112175 | Not Available | Positive | 4675338 - 4676234 | 31471.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.