Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa reductase | SAMN06295900_112156 | Not Available | Positive | 4652638 - 4654077 | 50865.6 |
| nitronate monooxygenase | SAMN06295900_112157 | Not Available | Positive | 4654250 - 4655440 | 42426.6 |
| outer membrane protein | SAMN06295900_112158 | Not Available | Positive | 4655510 - 4656175 | 23276.2 |
| hypothetical protein | SAMN06295900_112159 | Not Available | Negative | 4656290 - 4656493 | 7425.78 |
| putrescine transport system substrate-binding protein | SAMN06295900_112160 | Not Available | Positive | 4656944 - 4658044 | 40300.6 |
| putrescine transport system atp-binding protein | SAMN06295900_112161 | Not Available | Positive | 4658156 - 4659310 | 41838.6 |
| putrescine transport system permease protein | SAMN06295900_112162 | Not Available | Positive | 4659274 - 4660236 | 35840.9 |
| putrescine transport system permease protein | SAMN06295900_112163 | Not Available | Positive | 4660233 - 4661060 | 30388.1 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06295900_112164 | Not Available | Negative | 4661094 - 4662593 | 51864.8 |
| multidrug efflux pump subunit acrb | SAMN06295900_112165 | Not Available | Negative | 4662596 - 4665808 | 117408.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.