Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pimeloyl-acp methyl ester carboxylesterase | SAMN06295900_112146 | Not Available | Negative | 4638417 - 4639310 | 32429.2 |
| ssu ribosomal protein s12p methylthiotransferase | SAMN06295900_112147 | Not Available | Positive | 4639501 - 4640892 | 50200.4 |
| 3-ketoacyl-coa thiolase | SAMN06295900_112148 | Not Available | Positive | 4640970 - 4642154 | 41064.5 |
| cystathionine beta-lyase | SAMN06295900_112149 | Not Available | Positive | 4642206 - 4643393 | 43011.4 |
| phosphoserine phosphatase | SAMN06295900_112150 | Not Available | Negative | 4643470 - 4644366 | 31892.5 |
| hypothetical protein | SAMN06295900_112151 | Not Available | Positive | 4644604 - 4645155 | 18611.4 |
| hypothetical protein | SAMN06295900_112152 | Not Available | Positive | 4645497 - 4647740 | 79404.5 |
| atpase components of abc transporters with duplicated atpase domains | SAMN06295900_112153 | Not Available | Positive | 4647802 - 4649394 | 59692.1 |
| luxr family transcriptional regulator, quorum-sensing transcription factor lasr | SAMN06295900_112154 | Not Available | Negative | 4649464 - 4650219 | 28447.2 |
| aaa+-type atpase, spovk/ycf46/vps4 family | SAMN06295900_112155 | Not Available | Positive | 4650402 - 4652546 | 79148.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.