Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_112136 | Not Available | Positive | 4626842 - 4627588 | 27861.1 |
| protein of unknown function | SAMN06295900_112137 | Not Available | Positive | 4627672 - 4627887 | 8423.29 |
| atp-dependent dna helicase ding | SAMN06295900_112138 | Not Available | Positive | 4627922 - 4630192 | 81877.8 |
| beta-barrel assembly machine subunit bamd | SAMN06295900_112139 | Not Available | Negative | 4630319 - 4631200 | 32772.6 |
| ribosomal large subunit pseudouridine synthase d | SAMN06295900_112140 | Not Available | Positive | 4631249 - 4632430 | 43140.2 |
| conserved hypothetical protein | SAMN06295900_112141 | Not Available | Positive | 4632508 - 4633329 | 29214.8 |
| polyhydroxyalkanoate synthase | SAMN06295900_112142 | Not Available | Positive | 4633751 - 4635535 | 65176.6 |
| acetyl-coa acetyltransferase | SAMN06295900_112143 | Not Available | Positive | 4635610 - 4636791 | 40766.5 |
| 3-oxoacyl-[acyl-carrier-protein] reductase /acetoacetyl-coa reductase | SAMN06295900_112144 | Not Available | Positive | 4636887 - 4637627 | 26415.5 |
| polyhydroxyalkanoate synthesis repressor phar | SAMN06295900_112145 | Not Available | Positive | 4637803 - 4638372 | 21884.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.