Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase-3 subunit gamma/tau | SAMN06295900_112106 | Not Available | Positive | 4592805 - 4595075 | 79679.7 |
| hypothetical protein | SAMN06295900_112107 | Not Available | Positive | 4595172 - 4595498 | 11760.5 |
| dna replication and repair protein recr | SAMN06295900_112108 | Not Available | Positive | 4595533 - 4596129 | 21924.6 |
| formyl-coa transferase | SAMN06295900_112109 | Not Available | Positive | 4596167 - 4597372 | 42940.9 |
| 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase | SAMN06295900_112110 | Not Available | Positive | 4597461 - 4598219 | 27023.1 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN06295900_112111 | Not Available | Positive | 4598189 - 4599037 | 30895.6 |
| lipoprotein nlpd | SAMN06295900_112112 | Not Available | Positive | 4599043 - 4599975 | 31561.6 |
| rna polymerase, sigma 38 subunit, rpos | SAMN06295900_112113 | Not Available | Positive | 4599987 - 4601072 | 40556.6 |
| hypothetical protein | SAMN06295900_112114 | Not Available | Positive | 4601084 - 4601857 | 29060.4 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN06295900_112115 | Not Available | Negative | 4601873 - 4602727 | 31260.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.