Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna gm-2251 2'-o-methyltransferase | SAMN06295900_1125 | Not Available | Positive | 4489254 - 4489994 | 26146.5 |
| porin, gbp family | SAMN06295900_1126 | Not Available | Negative | 4490134 - 4491276 | 39627.6 |
| two component transcriptional regulator, winged helix family | SAMN06295900_1127 | Not Available | Positive | 4491769 - 4492503 | 27589.6 |
| two-component system, ompr family, osmolarity sensor histidine kinase envz | SAMN06295900_1128 | Not Available | Positive | 4492475 - 4493737 | 47156.3 |
| membrane fusion protein, multidrug efflux system | SAMN06295900_1129 | Not Available | Positive | 4493843 - 4495054 | 41791.8 |
| multidrug efflux pump | SAMN06295900_11210 | Not Available | Positive | 4495068 - 4498295 | 112999.0 |
| multidrug efflux pump | SAMN06295900_11211 | Not Available | Positive | 4498318 - 4501419 | 110023.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06295900_11212 | Not Available | Positive | 4501419 - 4502909 | 52487.4 |
| dissimilatory nitrite reductase (no-forming), copper type apoprotein | SAMN06295900_11213 | Not Available | Positive | 4503637 - 4505124 | 51934.9 |
| ribose-5-phosphate isomerase | SAMN06295900_11214 | Not Available | Positive | 4505284 - 4505976 | 23980.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.