Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pas domain s-box-containing protein | SAMN06295900_11175 | Not Available | Positive | 4359910 - 4360386 | 17841.9 |
| l-alanine dehydrogenase | SAMN06295900_11176 | Not Available | Negative | 4360481 - 4361596 | 38381.7 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN06295900_11177 | Not Available | Negative | 4361795 - 4362589 | 28946.6 |
| thioredoxin reductase | SAMN06295900_11178 | Not Available | Negative | 4362688 - 4364136 | 50746.4 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | SAMN06295900_11179 | Not Available | Negative | 4364133 - 4364426 | 10436.8 |
| glycine/d-amino acid oxidase | SAMN06295900_11180 | Not Available | Negative | 4364419 - 4365543 | 39912.9 |
| transcriptional regulator, lysr family | SAMN06295900_11181 | Not Available | Positive | 4365692 - 4366591 | 32678.8 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN06295900_11182 | Not Available | Positive | 4366673 - 4367767 | 39752.6 |
| diguanylate phosphodiesterase | SAMN06295900_11183 | Not Available | Positive | 4368004 - 4370199 | 79663.4 |
| mannose-6-phosphate isomerase, cupin superfamily | SAMN06295900_11184 | Not Available | Negative | 4370276 - 4370623 | 12870.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.