Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cupin domain-containing protein | SAMN06295900_110122 | Not Available | Positive | 4209595 - 4210182 | 20996.9 |
| fumarylacetoacetate (faa) hydrolase | SAMN06295900_110123 | Not Available | Positive | 4210179 - 4211180 | 35885.5 |
| nucleoside-diphosphate-sugar epimerase | SAMN06295900_110124 | Not Available | Positive | 4211177 - 4212124 | 33534.2 |
| pas domain s-box-containing protein | SAMN06295900_110125 | Not Available | Positive | 4212327 - 4214639 | 84882.3 |
| hypothetical protein | SAMN06295900_110126 | Not Available | Positive | 4214806 - 4216170 | 50241.3 |
| transcriptional regulator, gntr family | SAMN06295900_110127 | Not Available | Negative | 4216333 - 4217901 | 56629.5 |
| negative transcriptional regulator, paib family | SAMN06295900_110128 | Not Available | Positive | 4218025 - 4218726 | 25667.2 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN06295900_110129 | Not Available | Positive | 4218833 - 4219468 | 22093.4 |
| acetyltransferase | SAMN06295900_110130 | Not Available | Positive | 4219631 - 4222009 | 83695.8 |
| hypothetical protein | SAMN06295900_110131 | Not Available | Negative | 4222031 - 4222573 | 20122.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.