Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ornithine cyclodeaminase/alanine dehydrogenase | SAMN06295900_110112 | Not Available | Negative | 4199213 - 4200223 | 34945.1 |
| transcriptional regulator, lysr family | SAMN06295900_110113 | Not Available | Negative | 4200303 - 4201514 | 43533.8 |
| transcriptional regulator, lysr family | SAMN06295900_110114 | Not Available | Negative | 4201625 - 4202542 | 34322.9 |
| uncharacterized conserved protein | SAMN06295900_110115 | Not Available | Positive | 4202845 - 4203771 | 32708.8 |
| prolyl oligopeptidase family protein | SAMN06295900_110116 | Not Available | Positive | 4203791 - 4204951 | 43381.6 |
| glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein | SAMN06295900_110117 | Not Available | Positive | 4204985 - 4205941 | 34873.2 |
| ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase | SAMN06295900_110118 | Not Available | Positive | 4205959 - 4206330 | 13282.9 |
| 2-polyprenyl-6-methoxyphenol hydroxylase | SAMN06295900_110119 | Not Available | Positive | 4206440 - 4207567 | 39966.4 |
| predicted arabinose efflux permease, mfs family | SAMN06295900_110120 | Not Available | Positive | 4207584 - 4208789 | 40548.3 |
| kynurenine formamidase | SAMN06295900_110121 | Not Available | Positive | 4208786 - 4209598 | 29507.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.