Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_110102 | Not Available | Positive | 4185349 - 4186572 | 44514.4 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_110103 | Not Available | Positive | 4186587 - 4187771 | 42499.6 |
| hypothetical protein | SAMN06295900_110104 | Not Available | Negative | 4188300 - 4189196 | 32813.1 |
| transcriptional regulator, abiei antitoxin, type iv ta system | SAMN06295900_110105 | Not Available | Negative | 4189196 - 4190275 | 39701.6 |
| hypothetical protein | SAMN06295900_110106 | Not Available | Positive | 4190731 - 4192149 | 50879.2 |
| methyl-accepting chemotaxis protein-1, serine sensor receptor | SAMN06295900_110107 | Not Available | Positive | 4192489 - 4194255 | 60820.5 |
| bacterial peptide chain release factor 3 (brf-3) | SAMN06295900_110108 | Not Available | Positive | 4194370 - 4195971 | 58995.6 |
| hypothetical protein | SAMN06295900_110109 | Not Available | Negative | 4196071 - 4196520 | 16255.9 |
| succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase | SAMN06295900_110110 | Not Available | Negative | 4196669 - 4198129 | 52190.6 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN06295900_110111 | Not Available | Negative | 4198159 - 4199178 | 37769.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.