Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s oxidoreductase | SAMN06295900_11092 | Not Available | Positive | 4171143 - 4172480 | 49070.2 |
| protein of unknown function | SAMN06295900_11093 | Not Available | Positive | 4172517 - 4173098 | 21956.3 |
| transposase | SAMN06295900_11094 | Not Available | Positive | 4173615 - 4174619 | 36706.0 |
| mannose-1-phosphate guanylyltransferase (gdp) /mannose-6-phosphate isomerase, type 2 | SAMN06295900_11095 | Not Available | Negative | 4174747 - 4176318 | 56551.9 |
| putative colanic acid biosysnthesis udp-glucose lipid carrier transferase | SAMN06295900_11096 | Not Available | Positive | 4176597 - 4178006 | 52514.4 |
| udp-glucose dehydrogenase | SAMN06295900_11097 | Not Available | Positive | 4178083 - 4179504 | 51090.2 |
| polysaccharide export outer membrane protein | SAMN06295900_11098 | Not Available | Positive | 4179531 - 4180706 | 42472.8 |
| tyrosine-protein kinase etk/wzc | SAMN06295900_11099 | Not Available | Positive | 4180711 - 4182948 | 79584.6 |
| glycosyltransferase like family 2 | SAMN06295900_110100 | Not Available | Positive | 4182945 - 4183865 | 34125.4 |
| hypothetical protein | SAMN06295900_110101 | Not Available | Positive | 4183865 - 4185352 | 54143.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.