Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c oxidase assembly factor ctag | SAMN06295900_11032 | Not Available | Negative | 4107139 - 4108173 | 36561.2 |
| hypothetical protein | SAMN06295900_11033 | Not Available | Negative | 4108170 - 4108499 | 11886.5 |
| heme/copper-type cytochrome/quinol oxidase, subunit 3 | SAMN06295900_11034 | Not Available | Negative | 4108546 - 4109211 | 24193.3 |
| cytochrome c oxidase subunit 1/cytochrome c oxidase subunit i+iii | SAMN06295900_11035 | Not Available | Negative | 4109208 - 4111181 | 72480.5 |
| cytochrome c oxidase subunit 2 | SAMN06295900_11036 | Not Available | Negative | 4111211 - 4112203 | 34479.4 |
| short-chain dehydrogenase | SAMN06295900_11037 | Not Available | Positive | 4112559 - 4113632 | 38214.9 |
| manganese transport protein | SAMN06295900_11038 | Not Available | Positive | 4113762 - 4115036 | 44096.4 |
| nadp-dependent aldehyde dehydrogenase | SAMN06295900_11039 | Not Available | Positive | 4115449 - 4117029 | 55200.6 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN06295900_11040 | Not Available | Negative | 4117100 - 4117702 | 21199.3 |
| hypothetical protein | SAMN06295900_11041 | Not Available | Negative | 4117715 - 4118179 | 16432.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.