Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| paraquat-inducible protein b | SAMN06295900_11012 | Not Available | Positive | 4076887 - 4078431 | 55240.1 |
| nadh dehydrogenase subunit f | SAMN06295900_11013 | Not Available | Negative | 4078556 - 4079902 | 47586.1 |
| succinate dehydrogenase / fumarate reductase flavoprotein subunit/l-aspartate oxidase | SAMN06295900_11014 | Not Available | Negative | 4079913 - 4081526 | 56474.7 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | SAMN06295900_11015 | Not Available | Negative | 4081523 - 4082164 | 22615.3 |
| two-component system, ntrc family, c4-dicarboxylate transport sensor histidine kinase dctb | SAMN06295900_11016 | Not Available | Positive | 4082317 - 4084524 | 81240.1 |
| two-component system, ntrc family, c4-dicarboxylate transport response regulator dctd | SAMN06295900_11017 | Not Available | Positive | 4084515 - 4085849 | 48973.6 |
| malate dehydrogenase (oxaloacetate-decarboxylating)(nadp+) | SAMN06295900_11018 | Not Available | Positive | 4086240 - 4087901 | 61182.7 |
| putative transport protein | SAMN06295900_11019 | Not Available | Positive | 4088064 - 4089746 | 59074.1 |
| predicted ferric reductase | SAMN06295900_11020 | Not Available | Positive | 4089917 - 4091320 | 52454.5 |
| transcriptional regulator, lysr family | SAMN06295900_11021 | Not Available | Positive | 4091563 - 4092474 | 33848.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.