Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein impg | SAMN06295900_109166 | Not Available | Negative | 4042539 - 4044353 | 65596.6 |
| allosteric nadp-dependent malic enzyme | SAMN06295900_109167 | Not Available | Positive | 4044950 - 4047223 | 81395.9 |
| indolepyruvate ferredoxin oxidoreductase | SAMN06295900_109168 | Not Available | Negative | 4047372 - 4050965 | 130029.0 |
| transcriptional regulator, tetr family | SAMN06295900_109169 | Not Available | Negative | 4051274 - 4051888 | 22718.3 |
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN06295900_109170 | Not Available | Positive | 4051973 - 4053097 | 41882.9 |
| hypothetical protein | SAMN06295900_109171 | Not Available | Positive | 4053260 - 4053463 | 6998.33 |
| 4-hydroxyphenylpyruvate dioxygenase | SAMN06295900_109172 | Not Available | Negative | 4053577 - 4054674 | 40824.5 |
| transcriptional regulator, asnc family | SAMN06295900_109173 | Not Available | Positive | 4054823 - 4055314 | 18286.2 |
| protein n-acetyltransferase, rimj/riml family | SAMN06295900_109174 | Not Available | Negative | 4055432 - 4056103 | 24967.8 |
| transcriptional regulator, tetr family | SAMN06295900_109175 | Not Available | Negative | 4056347 - 4056961 | 23315.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.