Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_109126 | Not Available | Positive | 3980764 - 3981360 | 20912.3 |
| type iii secretion protein t | SAMN06295900_109127 | Not Available | Positive | 3981354 - 3982157 | 28476.9 |
| type iii secretion protein u | SAMN06295900_109128 | Not Available | Positive | 3982161 - 3983192 | 37078.8 |
| hypothetical protein | SAMN06295900_109129 | Not Available | Negative | 3983221 - 3986607 | 119460.0 |
| lysm domain-containing protein | SAMN06295900_109130 | Not Available | Negative | 3986945 - 3999565 | 452943.0 |
| type iv secretion system protein virb1 | SAMN06295900_109131 | Not Available | Negative | 3999857 - 4000699 | 28703.5 |
| type iii secretion protein r | SAMN06295900_109132 | Not Available | Negative | 4000696 - 4001364 | 23904.1 |
| type iii secretion system apparatus protein yscq/hrcq | SAMN06295900_109133 | Not Available | Negative | 4001357 - 4002547 | 41232.9 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN06295900_109134 | Not Available | Negative | 4002803 - 4003249 | 16662.9 |
| hypothetical protein | SAMN06295900_109135 | Not Available | Positive | 4003420 - 4003671 | 8272.13 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.