Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-deoxy-l-threo-5-hexulose uronate isomerase | SAMN06295900_108193 | Not Available | Negative | 3813711 - 3814547 | 30931.9 |
| 2-keto-3-deoxygluconate permease | SAMN06295900_108194 | Not Available | Positive | 3814771 - 3815784 | 34418.4 |
| protein of unknown function | SAMN06295900_108195 | Not Available | Positive | 3815924 - 3816391 | 16627.8 |
| 2,4-dienoyl-coa reductase | SAMN06295900_108196 | Not Available | Negative | 3816476 - 3817576 | 39847.3 |
| dna-binding transcriptional regulator, lysr family | SAMN06295900_108197 | Not Available | Positive | 3817689 - 3818639 | 34902.1 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN06295900_108198 | Not Available | Negative | 3818591 - 3819481 | 30805.1 |
| 4-oxalomesaconate tautomerase | SAMN06295900_108199 | Not Available | Negative | 3819506 - 3820705 | 41315.6 |
| 4-carboxy-4-hydroxy-2-oxoadipate aldolase | SAMN06295900_108200 | Not Available | Negative | 3820718 - 3821413 | 24470.6 |
| 4-oxalomesaconate hydratase | SAMN06295900_108201 | Not Available | Negative | 3821410 - 3822141 | 27355.6 |
| transcriptional regulator, gntr family | SAMN06295900_108202 | Not Available | Positive | 3822433 - 3823131 | 25404.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.