Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upf0271 protein | SAMN06295900_108163 | Not Available | Negative | 3782239 - 3782991 | 26392.2 |
| biotin-dependent carboxylase uncharacterized domain-containing protein | SAMN06295900_108164 | Not Available | Negative | 3783011 - 3784060 | 36921.4 |
| sensor histidine kinase inhibitor, kipi family | SAMN06295900_108165 | Not Available | Negative | 3784057 - 3784710 | 23074.7 |
| predicted transcription regulator, contains hth domain, marr family | SAMN06295900_108166 | Not Available | Positive | 3784934 - 3785446 | 18764.8 |
| 5,10-methenyltetrahydrofolate synthetase | SAMN06295900_108167 | Not Available | Negative | 3785498 - 3786097 | 21439.6 |
| soluble lytic murein transglycosylase | SAMN06295900_108168 | Not Available | Positive | 3786115 - 3788088 | 71904.1 |
| nadh dehydrogenase | SAMN06295900_108169 | Not Available | Positive | 3788176 - 3789132 | 34369.0 |
| glutathione s-transferase | SAMN06295900_108170 | Not Available | Positive | 3789208 - 3789858 | 23817.4 |
| trna nucleotidyltransferase (cca-adding enzyme) | SAMN06295900_108171 | Not Available | Positive | 3789855 - 3791114 | 46364.9 |
| sam-dependent methyltransferase, mida family | SAMN06295900_108172 | Not Available | Negative | 3791119 - 3792357 | 43342.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.