Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein (porin) | SAMN06295900_1082 | Not Available | Positive | 3614901 - 3616031 | 39172.6 |
| osmotically inducible lipoprotein osmb | SAMN06295900_1083 | Not Available | Negative | 3616131 - 3616322 | 6033.56 |
| atp synthase f1 subcomplex epsilon subunit | SAMN06295900_1084 | Not Available | Negative | 3616447 - 3616884 | 15709.9 |
| f-type h+-transporting atpase subunit gamma | SAMN06295900_1085 | Not Available | Negative | 3616895 - 3617764 | 32149.8 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN06295900_1086 | Not Available | Positive | 3618109 - 3619602 | 53018.2 |
| ornithine decarboxylase | SAMN06295900_1087 | Not Available | Positive | 3619668 - 3622004 | 86833.8 |
| arginine deiminase | SAMN06295900_1088 | Not Available | Positive | 3622027 - 3623250 | 45528.9 |
| ornithine carbamoyltransferase | SAMN06295900_1089 | Not Available | Positive | 3623315 - 3624316 | 37319.5 |
| carbamate kinase | SAMN06295900_10810 | Not Available | Positive | 3624393 - 3625295 | 31415.8 |
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN06295900_10811 | Not Available | Negative | 3625382 - 3626170 | 29269.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.