Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv pilus assembly protein piln | SAMN06295900_107171 | Not Available | Negative | 3547820 - 3548458 | 21991.5 |
| type iv pilus assembly protein pilm | SAMN06295900_107172 | Not Available | Negative | 3548455 - 3549477 | 34961.7 |
| penicillin-binding protein 1a | SAMN06295900_107173 | Not Available | Positive | 3549695 - 3552130 | 87461.2 |
| cyay protein | SAMN06295900_107174 | Not Available | Negative | 3552195 - 3552518 | 11692.5 |
| lipoprotein-attachment site-containing protein | SAMN06295900_107175 | Not Available | Positive | 3552567 - 3552872 | 9946.88 |
| diaminopimelate decarboxylase | SAMN06295900_107176 | Not Available | Positive | 3552919 - 3554181 | 44986.5 |
| sulfoxide reductase heme-binding subunit yedz | SAMN06295900_107177 | Not Available | Negative | 3554211 - 3554915 | 26466.1 |
| sulfoxide reductase catalytic subunit yedy | SAMN06295900_107178 | Not Available | Negative | 3554941 - 3555945 | 37516.8 |
| cytochrome c-type biogenesis protein ccsb | SAMN06295900_107179 | Not Available | Negative | 3556137 - 3557375 | 45683.3 |
| cytochrome c biogenesis protein | SAMN06295900_107180 | Not Available | Negative | 3557326 - 3559518 | 80057.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.