Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two component transcriptional regulator, winged helix family | SAMN06295900_107151 | Not Available | Positive | 3522274 - 3523017 | 27998.6 |
| two-component system, ompr family, osmolarity sensor histidine kinase envz | SAMN06295900_107152 | Not Available | Positive | 3523039 - 3524316 | 46400.7 |
| protein-tyrosine phosphatase | SAMN06295900_107153 | Not Available | Negative | 3524602 - 3525495 | 30663.5 |
| predicted arabinose efflux permease, mfs family | SAMN06295900_107154 | Not Available | Positive | 3525824 - 3527167 | 48281.0 |
| 2'-5' rna ligase | SAMN06295900_107155 | Not Available | Negative | 3527253 - 3527855 | 21501.8 |
| glutamate synthase (nadh) small subunit | SAMN06295900_107156 | Not Available | Negative | 3527872 - 3529338 | 53505.9 |
| glutamate synthase (nadh) large subunit | SAMN06295900_107157 | Not Available | Negative | 3529522 - 3534222 | 171215.0 |
| putative transposase | SAMN06295900_107158 | Not Available | Negative | 3534571 - 3535281 | 27395.6 |
| outer membrane protein | SAMN06295900_107159 | Not Available | Positive | 3535465 - 3536190 | 25801.4 |
| membrane-anchored ribosome-binding protein, inhibits growth in stationary phase, elab/yqjd/duf883 family | SAMN06295900_107160 | Not Available | Positive | 3536439 - 3536816 | 13805.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.