Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate permease | SAMN06295900_10750 | Not Available | Negative | 3429528 - 3430787 | 45552.4 |
| nitt/taut family transport system substrate-binding protein | SAMN06295900_10751 | Not Available | Negative | 3430929 - 3431936 | 36173.2 |
| two component transcriptional regulator, winged helix family | SAMN06295900_10752 | Not Available | Positive | 3432000 - 3432737 | 27345.3 |
| two-component system, ompr family, sensor histidine kinase tcte | SAMN06295900_10753 | Not Available | Positive | 3432724 - 3434109 | 49443.9 |
| transcriptional regulator, lysr family | SAMN06295900_10754 | Not Available | Negative | 3434163 - 3435059 | 31919.9 |
| citrate-mg2+:h+ or citrate-ca2+:h+ symporter, citmhs family | SAMN06295900_10755 | Not Available | Positive | 3435159 - 3436475 | 46213.6 |
| protein of unknown function | SAMN06295900_10756 | Not Available | Positive | 3436501 - 3437868 | 47793.3 |
| hypothetical protein | SAMN06295900_10757 | Not Available | Positive | 3437869 - 3438207 | 11927.6 |
| protein of unknown function | SAMN06295900_10758 | Not Available | Positive | 3438434 - 3439435 | 36819.6 |
| acyl-coa dehydrogenase | SAMN06295900_10759 | Not Available | Negative | 3439416 - 3440543 | 40827.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.