Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylulokinase/hypothetical protein | SAMN06295900_106433 | Not Available | Positive | 3364510 - 3365970 | 50679.1 |
| s-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase | SAMN06295900_106434 | Not Available | Positive | 3366137 - 3367243 | 39308.6 |
| s-formylglutathione hydrolase | SAMN06295900_106435 | Not Available | Positive | 3367264 - 3368121 | 31386.2 |
| uncharacterized membrane protein yoak, upf0700 family | SAMN06295900_106436 | Not Available | Positive | 3368243 - 3368998 | 26335.7 |
| d-sorbitol dehydrogenase (acceptor) | SAMN06295900_106437 | Not Available | Positive | 3369327 - 3370103 | 27938.7 |
| sorbitol-binding protein /mannitol-binding protein | SAMN06295900_106438 | Not Available | Positive | 3370171 - 3371505 | 48240.2 |
| sorbitol abc transporter membrane protein /mannitol abc transporter membrane protein | SAMN06295900_106439 | Not Available | Positive | 3371626 - 3372561 | 34059.4 |
| sorbitol abc transporter membrane protein /mannitol abc transporter membrane protein | SAMN06295900_106440 | Not Available | Positive | 3372558 - 3373412 | 31323.0 |
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN06295900_106441 | Not Available | Positive | 3373409 - 3374149 | 26024.4 |
| multiple sugar transport system atp-binding protein | SAMN06295900_106442 | Not Available | Positive | 3374137 - 3375258 | 40575.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.