Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fructose-bisphosphate aldolase | SAMN06295900_106403 | Not Available | Positive | 3330642 - 3331706 | 38591.4 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | SAMN06295900_106404 | Not Available | Positive | 3332006 - 3332896 | 32833.1 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | SAMN06295900_106405 | Not Available | Positive | 3332960 - 3333481 | 17849.7 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | SAMN06295900_106406 | Not Available | Positive | 3333520 - 3334740 | 42511.0 |
| translation factor sua5 | SAMN06295900_106407 | Not Available | Positive | 3334756 - 3335796 | 36182.0 |
| phospholipase/lecithinase/hemolysin | SAMN06295900_106408 | Not Available | Negative | 3335898 - 3337031 | 37627.1 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN06295900_106409 | Not Available | Negative | 3337104 - 3338054 | 35927.3 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN06295900_106410 | Not Available | Negative | 3338359 - 3339957 | 55904.2 |
| two component transcriptional regulator, winged helix family | SAMN06295900_106411 | Not Available | Positive | 3340172 - 3340834 | 24039.4 |
| two-component system, ompr family, sensor kinase | SAMN06295900_106412 | Not Available | Positive | 3340831 - 3342162 | 47449.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.