Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system major needle protein, yscf/mxih/prgi family | SAMN06295900_106393 | Not Available | Negative | 3321870 - 3322085 | 7819.51 |
| transcriptional regulator, arac family | SAMN06295900_106394 | Not Available | Negative | 3322101 - 3322883 | 30165.1 |
| hypothetical protein | SAMN06295900_106395 | Not Available | Positive | 3323162 - 3323521 | 13385.0 |
| secreted effector protein sseb | SAMN06295900_106396 | Not Available | Positive | 3323542 - 3324273 | 26543.4 |
| secretion system chaperone ssca | SAMN06295900_106397 | Not Available | Positive | 3324341 - 3324820 | 17960.0 |
| secreted effector protein ssec | SAMN06295900_106398 | Not Available | Positive | 3324825 - 3326240 | 49341.0 |
| secreted effector protein ssed | SAMN06295900_106399 | Not Available | Positive | 3326277 - 3326867 | 20811.6 |
| hypothetical protein | SAMN06295900_106400 | Not Available | Positive | 3326879 - 3327310 | 16299.7 |
| phosphoglycerate kinase | SAMN06295900_106401 | Not Available | Positive | 3327430 - 3328728 | 44961.2 |
| pyruvate kinase | SAMN06295900_106402 | Not Available | Positive | 3328978 - 3330414 | 51207.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.