Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_106383 | Not Available | Positive | 3314629 - 3315024 | 14523.4 |
| type iii secretion protein c | SAMN06295900_106384 | Not Available | Positive | 3315021 - 3316535 | 54584.7 |
| type iii secretion protein d | SAMN06295900_106385 | Not Available | Positive | 3316545 - 3317756 | 42206.5 |
| type iii secretion system, e component of needle | SAMN06295900_106386 | Not Available | Positive | 3317787 - 3318023 | 8840.7 |
| type iii secretion regulator yopn/lcre/inve/mxic | SAMN06295900_106387 | Not Available | Negative | 3318115 - 3319239 | 40700.7 |
| flagellar biosynthesis/type iii secretory pathway protein flih | SAMN06295900_106388 | Not Available | Negative | 3319236 - 3319895 | 24013.5 |
| type iii secretion system subunit | SAMN06295900_106389 | Not Available | Negative | 3319892 - 3320488 | 22119.6 |
| type iii secretion protein j | SAMN06295900_106390 | Not Available | Negative | 3320485 - 3321213 | 26400.3 |
| type iii secretion apparatus protein, ysci/hrpb, c-terminal domain-containing protein | SAMN06295900_106391 | Not Available | Negative | 3321210 - 3321551 | 11760.1 |
| type iii secretion system protein, ssah family | SAMN06295900_106392 | Not Available | Negative | 3321565 - 3321864 | 10411.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.