Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_106343 | Not Available | Positive | 3275442 - 3277235 | 66265.1 |
| hypothetical protein | SAMN06295900_106344 | Not Available | Negative | 3277439 - 3278461 | 36770.1 |
| Trna-met | Not Available | Not Available | Positive | 3279004 - 3279080 | Not Available |
| sugar transporter | SAMN06295900_106346 | Not Available | Negative | 3279196 - 3280854 | 58856.1 |
| two-component system, ompr family, sensor histidine kinase tcte | SAMN06295900_106347 | Not Available | Negative | 3281091 - 3282602 | 54417.8 |
| two component transcriptional regulator, winged helix family | SAMN06295900_106348 | Not Available | Negative | 3282737 - 3283534 | 28210.9 |
| reca protein | SAMN06295900_106349 | Not Available | Positive | 3283875 - 3284942 | 37909.7 |
| sos response regulatory protein oraa/recx, interacts with reca | SAMN06295900_106350 | Not Available | Positive | 3285202 - 3285702 | 18484.8 |
| protein of unknown function | SAMN06295900_106351 | Not Available | Positive | 3285811 - 3286455 | 23421.7 |
| succinyl-coa synthetase (adp-forming) beta subunit | SAMN06295900_106352 | Not Available | Positive | 3286494 - 3287663 | 41195.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.