Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted purr-regulated permease perm | SAMN06295900_106323 | Not Available | Negative | 3256083 - 3257165 | 38915.6 |
| ca2+-transporting atpase | SAMN06295900_106324 | Not Available | Negative | 3257339 - 3259999 | 92970.5 |
| hypothetical protein | SAMN06295900_106325 | Not Available | Negative | 3260221 - 3260514 | 10592.3 |
| transcriptional regulator, gntr family | SAMN06295900_106326 | Not Available | Positive | 3260985 - 3261689 | 25410.5 |
| 3-hydroxyisobutyrate dehydrogenase | SAMN06295900_106327 | Not Available | Positive | 3261768 - 3262670 | 30710.2 |
| uncharacterized conserved protein ygbk, duf1537 family | SAMN06295900_106328 | Not Available | Positive | 3262667 - 3264001 | 46229.5 |
| ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase | SAMN06295900_106329 | Not Available | Positive | 3263998 - 3264663 | 23868.3 |
| d-galactonate transporter | SAMN06295900_106330 | Not Available | Positive | 3264884 - 3266248 | 49452.2 |
| hydroxypyruvate isomerase | SAMN06295900_106331 | Not Available | Positive | 3266265 - 3267062 | 29602.9 |
| nucleoside-diphosphate-sugar epimerase | SAMN06295900_106332 | Not Available | Positive | 3267118 - 3268077 | 34022.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.