Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, deor family | SAMN06295900_106313 | Not Available | Negative | 3243857 - 3244585 | 26348.9 |
| hypothetical protein | SAMN06295900_106314 | Not Available | Negative | 3244744 - 3244884 | 5017.86 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN06295900_106315 | Not Available | Positive | 3245357 - 3246535 | 41634.3 |
| lactate permease | SAMN06295900_106316 | Not Available | Negative | 3246603 - 3248255 | 57824.1 |
| malate synthase | SAMN06295900_106317 | Not Available | Negative | 3248560 - 3250743 | 79157.1 |
| glc operon protein glcg | SAMN06295900_106318 | Not Available | Negative | 3250827 - 3251231 | 13486.0 |
| glycolate oxidase iron-sulfur subunit | SAMN06295900_106319 | Not Available | Negative | 3251267 - 3252487 | 43541.5 |
| glycolate oxidase fad binding subunit | SAMN06295900_106320 | Not Available | Negative | 3252509 - 3253576 | 37582.6 |
| glycolate oxidase | SAMN06295900_106321 | Not Available | Negative | 3253576 - 3255075 | 53027.3 |
| transcriptional regulator, gntr family | SAMN06295900_106322 | Not Available | Positive | 3255275 - 3256057 | 29296.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.