Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylulokinase | SAMN06295900_106303 | Not Available | Positive | 3229593 - 3231146 | 55927.8 |
| dermonecrotoxin of the papain-like fold | SAMN06295900_106304 | Not Available | Negative | 3231191 - 3233683 | 91495.0 |
| deoxyribose-phosphate aldolase | SAMN06295900_106305 | Not Available | Positive | 3234018 - 3235022 | 35381.7 |
| aldehyde dehydrogenase (nad+) | SAMN06295900_106306 | Not Available | Positive | 3235038 - 3237461 | 85696.0 |
| l-fucose mutarotase | SAMN06295900_106307 | Not Available | Positive | 3237526 - 3237999 | 16807.3 |
| ribokinase | SAMN06295900_106308 | Not Available | Positive | 3237996 - 3238934 | 31013.9 |
| monosaccharide abc transporter membrane protein, cut2 family | SAMN06295900_106309 | Not Available | Positive | 3238963 - 3240015 | 36643.6 |
| monosaccharide abc transporter substrate-binding protein, cut2 family | SAMN06295900_106310 | Not Available | Positive | 3240112 - 3241119 | 35558.7 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN06295900_106311 | Not Available | Positive | 3241192 - 3242763 | 56669.6 |
| monosaccharide abc transporter membrane protein, cut2 family | SAMN06295900_106312 | Not Available | Positive | 3242760 - 3243797 | 36589.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.