Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane protein tolc | SAMN06295900_106192 | Not Available | Negative | 3108313 - 3109809 | 53948.6 |
| hypothetical protein | SAMN06295900_106193 | Not Available | Negative | 3109806 - 3110105 | 10328.0 |
| two component heavy metal response transcriptional regulator, winged helix family | SAMN06295900_106194 | Not Available | Positive | 3110859 - 3111530 | 25582.1 |
| heavy metal sensor signal transduction histidine kinase | SAMN06295900_106195 | Not Available | Positive | 3111527 - 3112927 | 50728.6 |
| hypothetical protein | SAMN06295900_106196 | Not Available | Negative | 3112936 - 3115068 | 77965.6 |
| uncharacterized membrane protein yeaq/ymge, transglycosylase-associated protein family | SAMN06295900_106197 | Not Available | Negative | 3115196 - 3115450 | 8244.64 |
| transcriptional regulator, lysr family | SAMN06295900_106198 | Not Available | Negative | 3115729 - 3116700 | 35939.5 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN06295900_106199 | Not Available | Positive | 3116800 - 3117876 | 39114.4 |
| putative hydrolase of the had superfamily | SAMN06295900_106200 | Not Available | Positive | 3117873 - 3118655 | 28955.4 |
| glycine/d-amino acid oxidase | SAMN06295900_106201 | Not Available | Positive | 3118658 - 3119992 | 47014.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.