Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase) | SAMN06295900_106172 | Not Available | Negative | 3083137 - 3083685 | 19612.6 |
| arabinose-5-phosphate isomerase | SAMN06295900_106173 | Not Available | Negative | 3083685 - 3084668 | 34590.0 |
| kef-type potassium/proton antiporter, cpa2 family | SAMN06295900_106174 | Not Available | Positive | 3084830 - 3086833 | 71755.2 |
| adenine phosphoribosyltransferase | SAMN06295900_106175 | Not Available | Positive | 3086912 - 3087478 | 20522.0 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN06295900_106176 | Not Available | Positive | 3087505 - 3088122 | 21589.1 |
| nudix domain-containing protein | SAMN06295900_106177 | Not Available | Positive | 3088163 - 3089035 | 32198.2 |
| formyltetrahydrofolate deformylase | SAMN06295900_106178 | Not Available | Positive | 3089057 - 3089926 | 32237.8 |
| predicted purr-regulated permease perm | SAMN06295900_106179 | Not Available | Negative | 3089979 - 3091064 | 39750.4 |
| excinuclease abc subunit a | SAMN06295900_106180 | Not Available | Negative | 3091135 - 3093996 | 105497.0 |
| predicted arabinose efflux permease, mfs family | SAMN06295900_106181 | Not Available | Positive | 3094187 - 3095326 | 39474.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.