Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase, sigma 32 subunit, rpoh | SAMN06295900_106142 | Not Available | Negative | 3055527 - 3056462 | 34433.1 |
| lipid a 3-o-deacylase | SAMN06295900_106143 | Not Available | Positive | 3056853 - 3057419 | 20400.9 |
| protein of unknown function | SAMN06295900_106144 | Not Available | Positive | 3057464 - 3057847 | 14341.3 |
| 2-isopropylmalate synthase | SAMN06295900_106145 | Not Available | Negative | 3057953 - 3059608 | 60655.7 |
| anthranilate phosphoribosyltransferase | SAMN06295900_106146 | Not Available | Negative | 3060011 - 3060979 | 33992.9 |
| fumarylpyruvate hydrolase | SAMN06295900_106147 | Not Available | Positive | 3061257 - 3061970 | 25778.8 |
| maleylacetoacetate isomerase | SAMN06295900_106148 | Not Available | Positive | 3061998 - 3062642 | 24044.6 |
| signal recognition particle-docking protein ftsy | SAMN06295900_106149 | Not Available | Negative | 3062737 - 3063945 | 42346.9 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN06295900_106150 | Not Available | Positive | 3064193 - 3064807 | 22150.7 |
| phosphopantetheine adenylyltransferase | SAMN06295900_106151 | Not Available | Positive | 3064899 - 3065402 | 18756.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.