Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome oxidase assembly protein shyy1 | SAMN06295900_106132 | Not Available | Positive | 3043165 - 3043872 | 26394.8 |
| cytochrome oxidase cu insertion factor, sco1/senc/prrc family | SAMN06295900_106133 | Not Available | Positive | 3044040 - 3044597 | 20280.8 |
| cytochrome c oxidase assembly protein subunit 15 | SAMN06295900_106134 | Not Available | Positive | 3044630 - 3045763 | 40614.5 |
| protoheme ix farnesyltransferase | SAMN06295900_106135 | Not Available | Positive | 3045771 - 3046676 | 33069.2 |
| protein sco1/2 | SAMN06295900_106136 | Not Available | Positive | 3046673 - 3047302 | 22715.5 |
| d-methionine transport system substrate-binding protein | SAMN06295900_106137 | Not Available | Positive | 3047500 - 3048327 | 29540.5 |
| n-acetylglucosamine 6-phosphate deacetylase | SAMN06295900_106138 | Not Available | Positive | 3048780 - 3049883 | 38689.5 |
| glutamine--fructose-6-phosphate transaminase | SAMN06295900_106139 | Not Available | Positive | 3049867 - 3050883 | 35361.5 |
| phosphocarrier protein hpr /phosphoenolpyruvate--protein phosphotransferase /pts system iia component, glc family | SAMN06295900_106140 | Not Available | Positive | 3050891 - 3053485 | 90971.2 |
| pts system n-acetylglucosamine-specific iib component, glc family /pts system n-acetylglucosamine-specific iic component, glc family | SAMN06295900_106141 | Not Available | Positive | 3053566 - 3055314 | 60724.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.