Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii pantothenate kinase | SAMN06295900_10672 | Not Available | Negative | 2982437 - 2983255 | 28508.7 |
| bira family transcriptional regulator, biotin operon repressor / biotin-[acetyl-coa-carboxylase] ligase | SAMN06295900_10673 | Not Available | Negative | 2983252 - 2984184 | 32240.7 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN06295900_10674 | Not Available | Positive | 2984373 - 2985500 | 39803.1 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN06295900_10675 | Not Available | Positive | 2985500 - 2986378 | 31346.6 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN06295900_10676 | Not Available | Positive | 2986438 - 2987403 | 33503.1 |
| cholesterol transport system auxiliary component | SAMN06295900_10677 | Not Available | Positive | 2987436 - 2988098 | 22668.2 |
| (2fe-2s) ferredoxin | SAMN06295900_10678 | Not Available | Positive | 2988291 - 2988614 | 12159.4 |
| hypothetical protein | SAMN06295900_10679 | Not Available | Positive | 2988630 - 2989256 | 22698.5 |
| penicillin-binding protein 6. serine peptidase. merops family s11 | SAMN06295900_10680 | Not Available | Positive | 2989546 - 2990757 | 43517.5 |
| hypothetical protein | SAMN06295900_10681 | Not Available | Positive | 2990787 - 2991056 | 9901.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.