Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| diguanylate cyclase (ggdef) domain-containing protein | SAMN06295900_10622 | Not Available | Negative | 2925242 - 2926492 | 44927.2 |
| solute carrier family 10 (sodium/bile acid cotransporter), member 7 | SAMN06295900_10623 | Not Available | Negative | 2926852 - 2927862 | 35508.5 |
| hypothetical protein | SAMN06295900_10624 | Not Available | Positive | 2928144 - 2928620 | 16957.0 |
| outer membrane protein (porin) | SAMN06295900_10625 | Not Available | Positive | 2929178 - 2930281 | 39283.1 |
| hypothetical protein | SAMN06295900_10626 | Not Available | Positive | 2930553 - 2931119 | 18555.9 |
| hypothetical protein | SAMN06295900_10627 | Not Available | Negative | 2931192 - 2931341 | 4899.28 |
| methylmalonyl-coa mutase | SAMN06295900_10628 | Not Available | Positive | 2931569 - 2934967 | 123130.0 |
| nitronate monooxygenase | SAMN06295900_10629 | Not Available | Negative | 2935050 - 2936006 | 33533.5 |
| haloacetate dehalogenase | SAMN06295900_10630 | Not Available | Positive | 2936204 - 2937118 | 33620.3 |
| transcriptional regulator, asnc family | SAMN06295900_10631 | Not Available | Negative | 2937282 - 2937830 | 19808.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.