Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN06295900_10612 | Not Available | Positive | 2911274 - 2912551 | 47386.5 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN06295900_10613 | Not Available | Positive | 2912644 - 2913846 | 41881.4 |
| indolepyruvate ferredoxin oxidoreductase | SAMN06295900_10614 | Not Available | Negative | 2913935 - 2917561 | 130294.0 |
| inward rectifier potassium channel | SAMN06295900_10615 | Not Available | Negative | 2917862 - 2918821 | 35546.7 |
| hypothetical protein | SAMN06295900_10616 | Not Available | Negative | 2918879 - 2919124 | 9140.62 |
| hypothetical protein | SAMN06295900_10617 | Not Available | Negative | 2919236 - 2919457 | 7903.1 |
| fructokinase | SAMN06295900_10618 | Not Available | Negative | 2919544 - 2920464 | 32562.8 |
| mannose or cellobiose epimerase, n-acyl-d-glucosamine 2-epimerase family | SAMN06295900_10619 | Not Available | Negative | 2920461 - 2921786 | 51127.3 |
| transcriptional regulator, laci family | SAMN06295900_10620 | Not Available | Negative | 2921783 - 2922826 | 36637.2 |
| diguanylate cyclase/phosphodiesterase | SAMN06295900_10621 | Not Available | Negative | 2923149 - 2925011 | 66551.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.