Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pap2 superfamily protein | SAMN06295900_105412 | Not Available | Positive | 2875611 - 2876294 | 24484.5 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN06295900_105413 | Not Available | Positive | 2876291 - 2877442 | 42450.9 |
| hypothetical protein | SAMN06295900_105414 | Not Available | Positive | 2877439 - 2878314 | 33992.4 |
| rna polymerase sigma factor, sigma-70 family | SAMN06295900_105415 | Not Available | Negative | 2878417 - 2879706 | 47919.0 |
| polygalacturonase | SAMN06295900_105416 | Not Available | Positive | 2880243 - 2881832 | 54432.4 |
| transcriptional regulator, merr family | SAMN06295900_105417 | Not Available | Positive | 2882036 - 2883064 | 38976.1 |
| dicarboxylate/amino acid:cation (na+ or h+) symporter, daacs family | SAMN06295900_105418 | Not Available | Negative | 2883360 - 2884631 | 43751.1 |
| transcriptional regulator, gntr family | SAMN06295900_105419 | Not Available | Negative | 2884615 - 2885280 | 24853.7 |
| acetyltransferase (gnat) family protein | SAMN06295900_105420 | Not Available | Positive | 2885446 - 2885952 | 18932.7 |
| citrate synthase | SAMN06295900_105421 | Not Available | Negative | 2886125 - 2887426 | 48436.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.