Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate semialdehyde dehydrogenase | SAMN06295900_105392 | Not Available | Negative | 2854072 - 2855193 | 40270.0 |
| 3-isopropylmalate dehydrogenase | SAMN06295900_105393 | Not Available | Negative | 2855589 - 2856656 | 38168.9 |
| 3-isopropylmalate dehydratase, small subunit | SAMN06295900_105394 | Not Available | Negative | 2856771 - 2857421 | 24772.5 |
| predicted small secreted protein | SAMN06295900_105395 | Not Available | Negative | 2857428 - 2857574 | 4795.77 |
| 3-isopropylmalate dehydratase, large subunit | SAMN06295900_105396 | Not Available | Negative | 2857588 - 2858997 | 50979.0 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN06295900_105397 | Not Available | Negative | 2859504 - 2860202 | 25611.5 |
| ribose-phosphate pyrophosphokinase | SAMN06295900_105398 | Not Available | Positive | 2860325 - 2861179 | 30635.0 |
| nicotinamide phosphoribosyltransferase | SAMN06295900_105399 | Not Available | Positive | 2861212 - 2862975 | 65496.0 |
| peptidase family m48 | SAMN06295900_105400 | Not Available | Negative | 2862977 - 2864026 | 37201.6 |
| uncharacterized membrane protein yjgn, duf898 family | SAMN06295900_105401 | Not Available | Negative | 2864023 - 2865129 | 40012.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.