Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 2778114 - 2778189 | Not Available |
| rna polymerase, sigma 70 subunit, rpod | SAMN06295900_105333 | Not Available | Negative | 2778274 - 2780742 | 90680.4 |
| dna primase | SAMN06295900_105334 | Not Available | Negative | 2780845 - 2782731 | 69748.3 |
| hypothetical protein | SAMN06295900_105335 | Not Available | Negative | 2782789 - 2783235 | 15860.3 |
| ssu ribosomal protein s21p | SAMN06295900_105336 | Not Available | Negative | 2783620 - 2783832 | 8597.75 |
| hypothetical protein | SAMN06295900_105337 | Not Available | Negative | 2783904 - 2785130 | 43568.2 |
| o-sialoglycoprotein endopeptidase | SAMN06295900_105338 | Not Available | Positive | 2785230 - 2786255 | 36233.9 |
| gtp cyclohydrolase i | SAMN06295900_105339 | Not Available | Negative | 2786333 - 2787142 | 29925.8 |
| 1-deoxy-d-xylulose-5-phosphate synthase | SAMN06295900_105340 | Not Available | Negative | 2787287 - 2789182 | 68218.4 |
| farnesyl-diphosphate synthase | SAMN06295900_105341 | Not Available | Negative | 2789268 - 2790152 | 31035.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.