Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretory pathway atpase gspe/pule or t4p pilus assembly pathway atpase pilb | SAMN06295900_105242 | Not Available | Negative | 2694295 - 2695929 | 59112.7 |
| type iv pilus biogenesis protein pilp | SAMN06295900_105243 | Not Available | Negative | 2695947 - 2696681 | 23965.3 |
| pilin accessory protein (pilo) | SAMN06295900_105244 | Not Available | Negative | 2696671 - 2697948 | 46142.3 |
| type ivb pilus formation outer membrane protein, r64 piln family | SAMN06295900_105245 | Not Available | Negative | 2697973 - 2699655 | 58151.5 |
| toxin co-regulated pilus biosynthesis protein q | SAMN06295900_105246 | Not Available | Negative | 2699655 - 2700758 | 36662.4 |
| twitching motility protein pilt | SAMN06295900_105247 | Not Available | Positive | 2700899 - 2702002 | 41108.4 |
| two-component response regulator, amir/nast family, consists of rec and rna-binding antiterminator (antar) domains | SAMN06295900_105248 | Not Available | Negative | 2702257 - 2702877 | 23151.0 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN06295900_105249 | Not Available | Negative | 2702874 - 2704049 | 44052.0 |
| asp-trnaasn/glu-trnagln amidotransferase a subunit | SAMN06295900_105250 | Not Available | Negative | 2704105 - 2705388 | 44737.0 |
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN06295900_105251 | Not Available | Negative | 2705407 - 2706114 | 25593.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.