Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar phosphate permease | SAMN06295900_10592 | Not Available | Negative | 2516730 - 2518067 | 47523.6 |
| 4,5-dihydroxyphthalate decarboxylase | SAMN06295900_10593 | Not Available | Negative | 2518103 - 2518996 | 33128.9 |
| acetolactate synthase-1/2/3 large subunit | SAMN06295900_10594 | Not Available | Negative | 2519025 - 2520569 | 54491.7 |
| 4-hydroxy-2-oxoheptanedioate aldolase | SAMN06295900_10595 | Not Available | Negative | 2520570 - 2521427 | 31355.5 |
| catalytic ligb subunit of aromatic ring-opening dioxygenase | SAMN06295900_10596 | Not Available | Negative | 2521466 - 2522452 | 37474.6 |
| sugar phosphate permease | SAMN06295900_10597 | Not Available | Negative | 2522522 - 2523808 | 46438.2 |
| predicted metal-dependent hydrolase, tim-barrel fold | SAMN06295900_10598 | Not Available | Negative | 2523902 - 2524753 | 30639.6 |
| 4-oxalomesaconate hydratase | SAMN06295900_10599 | Not Available | Negative | 2524798 - 2525823 | 38200.4 |
| 4,5-dihydroxyphthalate decarboxylase | SAMN06295900_105100 | Not Available | Negative | 2525840 - 2526817 | 35612.7 |
| outer membrane protein (porin) | SAMN06295900_105101 | Not Available | Positive | 2527391 - 2528416 | 36709.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.