Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN06295900_10552 | Not Available | Positive | 2471306 - 2472745 | 50498.2 |
| acyl-coa reductase | SAMN06295900_10553 | Not Available | Positive | 2473007 - 2474449 | 50453.1 |
| adenosylmethionine-8-amino-7-oxononanoate aminotransferase | SAMN06295900_10554 | Not Available | Positive | 2474526 - 2475890 | 49225.0 |
| cytochrome b561 | SAMN06295900_10555 | Not Available | Positive | 2475995 - 2476558 | 21566.6 |
| outer membrane protein (porin) | SAMN06295900_10556 | Not Available | Positive | 2476614 - 2477762 | 41058.3 |
| hypothetical protein | SAMN06295900_10557 | Not Available | Negative | 2477789 - 2478727 | 35516.3 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN06295900_10558 | Not Available | Negative | 2478735 - 2480330 | 55123.1 |
| multidrug efflux pump | SAMN06295900_10559 | Not Available | Negative | 2480327 - 2483509 | 112714.0 |
| membrane fusion protein, multidrug efflux system | SAMN06295900_10560 | Not Available | Negative | 2483517 - 2484770 | 44302.0 |
| hypothetical protein | SAMN06295900_10561 | Not Available | Negative | 2484927 - 2485154 | 8496.04 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.